Publications

Denise Rui Ying Ong, Andres Gutierrez-Rodriguez, Laurence Garczarek, Dominique Marie, Adriana Lopes dos Santos (2023). Nested PCR Approach for <i>petB</i> Gene Metabarcoding of Marine <i>Synechococcus</i> Populations. Microbiology spectrum.

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Moira Décima, Michael R. Stukel, Scott D. Nodder, Andres Gutierrez-Rodriguez, Karen E. Selph, Adriana Lopes dos Santos, Karl Safi, Thomas B. Kelly, Fenella Deans, Sergio E. Morales, Federico Baltar, Mikel Latasa, Maxim Y. Gorbunov, Matt Pinkerton (2023). Salp Blooms Drive Strong Increases in Passive Carbon Export in the Southern Ocean. Nature Communications 14 (1): 425.

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F. Bruyant, R. Amiraux, M.-P. Amyot, P. Archambault, L. Artigue, L. Bardedo de Freitas, G. Becu, S. Belanger, P. Bourgain, A. Bricaud, E. Brouard, C. Brunet, T. Burgers, D. Caleb, K. Chalut, H. Clautre, V. Cornet-Barthaux, P. Coupel, M. Cusa, F. Cusset, L. Dadaglio, M. Davelaar, G. Deslongchamps, C. Dimier, J. Dinasquet, D. Dumont, B. Else, I. Eulaers, J. Ferland, G. Filteau, M.-H. Forget, J. Fort, L. Fortier, M. Gali-Tapias, M. Gallinari, S.-E. Garbus, N. Garcia, C. Gerikas Ribeiro, C. Gombault, P. Gourvil, C. Goyens, C. Grant, P.-L. Grondin, P. Guillot, S. Hillion, R. Hussher, F. Joux, H. Joy-Warren, G. Joyal, D. Kieber, A. Lafond, J. Lagunas, P. Lajeunesse, C. Lalande, J. Lariviere, F. Le Gall, K. Leblanc, M. Leblanc, J. Legras, K. Levesque, K.-M. Lewis, E. Leymarie, A. Leynaert, T. Linkowski, M. Lizotte, A. Lopes dos Santos, C. Marec, D. Marie, G. Masse, P. Massicotte, A. Matsuoka, L. Miller, S. Mirshak, N. Morata, B. Moriceau, P.-I. Morin, S. Morisset, A. Mosbech, A. Mucci, G. Nadai, C. Nozais, I. Obernosterer, T. Paire, C. Panagiotopoulos, M. Parenteau, N. Pelletier, M. Picheral, B. Queguiner, P. Raimbault, J. Ras, E. Rehm, L. Ribot Lacosta, J.-F. Rontani, B. Saint-Béat, J. Sansoulet, N. Sardet, C. Schmechtig, A. Sciandra, R. Sempere, C. Sevigny, J. Toullec, M. Tragin, J.-E. Tremblay, A.-P. Trottier, D. Vaulot, A. Vladoiu, L. Xue, G. Yunda-Guarin, M. Babin (2022). The Green Edge cruise: investigating the marginal ice zone processes during late spring and early summer to understand the fate of the Arctic phytoplankton bloom. Earth System Science Data, 14: 4607-4642.

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Daniel Vaulot, Clarence Wei Hung Sim, Denise Ong, Bryan Teo, Charlie Biwer, Mahwash Jamy, Adriana Lopes dos Santos (2022). metaPR2: a database of eukaryotic 18S rRNA metabarcodes with an emphasis on protists. Molecular Ecology Resources. DOI: 10.1111/1755-0998.13674.

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Andres Gutierrez-Rodriguez, Adriana Lopes dos Santos, Karl Safi, Ian Probert, Fabrice Not, Denise Fernández, Priscillia Gourvil, Jaret Bilewitch, Debbie Hulston, Matt Pinkerton, Scott D. Nodder (2022). Planktonic protist diversity across contrasting Subtropical and Subantarctic waters of the southwest Pacific. Progress in Oceanography 206: 102809.

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Adriana Lopes dos Santos, Catherine Ribeiro Gérikas, Denise Ong, Laurence Garczarek, Xiao Li Shi, Scott Nodder, Daniel Vaulot (2022). Phytoplankton diversity and ecology through the lens of high throughput sequencing technologies. Advances in Phytoplankton Ecology: Applications of Emerging Technologies Book.

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Sebastián Metz, Paula Huber, Victoria Accattatis, Adriana Lopes dos Santos, Estelle Bigeard, Fernando Unrein, Aurélie Chambouvet, Fabrice Not, Enrique Lara, Melina Devercelli (2022). Freshwater protists: unveiling the unexplored in a large floodplain system. Environmental Microbiology 24: 1731-1745.

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Kristy Yi Wen Chang, Frederick Reinhart Tanoto, Adriana Lopes dos Santos (2022). Cold-Loving Bacteria Can Survive in the Ice. Frontiers for Young Minds.

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Karoline Magalhães, Adriana Lopes Santos, Daniel Vaulot, Mariana Cabral Oliveira (2021). Hemiselmis aquamarina sp. nov. (Cryptomonadales, Cryptophyceae), a Cryptophyte with a Novel Phycobiliprotein Type (Cr-PC 564). Protist 172: 125832.

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Molly A. Moynihan, Nathalie F. Goodkin, Kyle M. Morgan, Phyllis Y. Y. Kho, Adriana Lopes dos Santos, Federico M. Lauro, David M. Baker, Patrick Martin (2021). Coral-associated nitrogen fixation rates and diazotrophic diversity on a nutrient-replete equatorial reef. The ISME Journal 16: 233-246.

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Nicole Trefaut, Rodrigo De la Iglesia, Mario Moreno-Pino, Adriana Lopes dos Santos, Catherine Gerikas Ribeiro, Génesis Parada-Pozo, Antonia Cristi, Dominique Marie, Daniel Vaulot (2021). Annual phytoplankton dynamics in coastal waters from Fildes Bay, Western Antarctic Peninsula.. Scientific Reports 11: 1368.

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Catherine Gerikas Ribeiro, Adriana Lopes dos Santos, Ian Probert, Daniel Vaulot, Bente Edvardsen (2020). Taxonomic reassignment of Pseudohaptolina birgeri comb. nov. (Haptophyta). Phycologia, 56: 606-615.

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Sheree Yau, Adriana Lopes dos Santos, Wenche Eikrem, Catherine Gerikas Ribeiro, Priscillia Gourvil, Marie-Line Escande, Sergio Balzano, Hervé Moreau, Daniel Vaulot (2020). Mantoniella beaufortii and Mantoniella baffinensis sp. nov. (Mamiellales, Mamiellophyceae), two new green algal species from the high Arctic. Journal of Phycology, 56: 37-51.

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Catherine Gerikas Ribeiro, Adriana Lopes dos Santos, Dominique Marie, Florence Le Gall, Ian Probert, Margot Tragin, Priscillia Gourvil, Daniel Vaulot (2020). Culturable diversity of Arctic phytoplankton during pack ice melting. Elementa 8, p.6.

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P Massicotte, R Amiraux, M.-P. Amyot, P Archambault, M Ardyna, L Arnaud, L Artigue, C Aubry, P Ayotte, G Becu, S Belanger, R Benner, H C Bittig, A Bricaud, E Brossier, F Bruyant, L Chauvaud, D Christiansen-Stowe, H Claustre, V Cornet-Barthaux, P Coupel, C Cox, A Delaforge, T Dezutter, C Dimier, F Domine, F Dufour, C Dufresne, D Dumont, J Ehn, B Else, J Ferland, M.-H. Forget, L Fortier, M Galashi, V Galindo, M Gallinari, N Garcia, C Gerikas-Ribeiro, M Gourdal, P Gourvil, C Goyens, P.-L. Grondin, P Guillot, C Guilmette, M.-N. Houssais, F Joux, L Lacour, T Lacour, A Lafond, J Lagunas, C Lalande, J Laliberte, S Lambert-Girard, J Lariviere, J Lavaud, F Le Gall, A LeBaron, K Leblanc, J Legras, M Lemire, M Levasseur, E Leymarie, A Leynaert, A Lopes dos Santos, A Lourenco, D Mah, C Marec, D Marie, N Martin, C Marty, S Marty, G Masse, A Matsuoka, L Matthes, B Moriceau, P.-E. Muller, C J Mundy, G Neukermans, L Oziel, C Panagiotopoulos, J.-J. Pangazi, G Picard, M Picheral, F du Sel, N Pogorzelec, I Probert, B Queguiner, P Raimbault, J Ras, E Rehm, E Reimer, J.-F. Rontani, S Rysgaard, B Saint-Beat, M Sampei, J Sansoulet, S Schmidt, R Sempere, C Sevigny, Y Shen, M Tragin, J.-E. Tremblay, D Vaulot, G Verin, F Vivier, A Vladoiu, J Whitehead, M Babin (2020). Green Edge ice camp campaigns: understanding the processes controlling the under-ice Arctic phytoplankton spring bloom. Earth System Science Data 12:151-176. DOI: 10.5194/essd-12-151-2020.

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Caroline Chénard, Winona Wijaya, Daniel Vaulot, Adriana Lopes dos Santos, Patrick Martin, Avneet Kaur, Federico M Lauro (2019). Temporal and spatial dynamics of Bacteria, Archaea and protists in equatorial coastal waters. Scientific Reports 9, 16390.

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Sebastián Metz, Adriana Lopes dos Santos, Manuel Castro Berman, Estelle Bigeard, Magdalena Licursi, Fabrice Not, Enrique Lara, Fernando Unrein (2019). Diversity of photosynthetic picoeukaryotes in eutrophic shallow lakes as assessed by combining flow cytometry cell-sorting and high throughput sequencing. FEMS Microbiology Ecology, 95: fiz038.

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Monique Turmel, Adriana Lopes dos Santos, Christian Otis, Roxanne Sergerie, Claude Lemieux (2019). Tracing the evolution of the plastome and mitogenome in the chloropicophyceae uncovered convergent tRNA gene losses and a variant plastid genetic code. Genome Biology and Evolution, 11: 1275–1292.

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Andres Gutierrez-Rodriguez, Michael R. Stukel, Adriana Lopes dos Santos, Tristan Biard, Daniel Vaulot, Michael R. Landry, Fabrice Not (2018). High contribution of Rhizaria (Radiolaria) to vertical export in the California Current Ecosystem revealed by DNA metabarcoding. The ISME Journal, 13: 964–976.

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A. Kuwata, K. Yamada, M. Tragin, M. Ichinomiya, S. Yoshikawa, D. Vaulot, A. Lopes dos Santos (2018). Bolidophyceae, a sister picoplanktonic group of diatoms - a review. Frontiers in Marine Science, 5:370.

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Catherine Gerikas Ribeiro, Adriana Lopes dos Santos, Dominique Marie, Frederico Pereira Brandini, Daniel Vaulot (2018). Small eukaryotic phytoplankton communities in tropical waters off Brazil are dominated by symbioses between Haptophyta and nitrogen-fixing cyanobacteria. The ISME Journal, (12), 5, pp. 1360–1374, https://doi.org/10.1038/s41396-018-0050-z.

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Claudia Egas, Carlos Henriquez-Castillo, Nathalie Delherbe, Ernesto Molina, Adriana Lopes dos Santos, Paris Lavin, Rodrigo De la Iglesia, Daniel Vaulot, Nicole Trefault (2017). Short timescale dynamics of phytoplankton in Fildes Bay, Antarctica. Antarctic Science, (29), 3, pp. 217–228, https://doi.org/10.1017/S0954102016000699.

Adriana Lopes dos Santos, Priscillia Gourvil, Margot Tragin, Mary-Helene Noel, Johan Decelle, Sarah Romac, Daniel Vaulot (2017). Diversity and oceanic distribution of prasinophytes clade VII, the dominant group of green algae in oceanic waters. The ISME Journal, (11), 2, pp. 512–528, https://doi.org/10.1038/ismej.2016.120.

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Adriana Lopes dos Santos, Thibaut Pollina, Priscillia Gourvil, Erwan Corre, Dominique Marie, Jose Luis Garrido, Francisco Rodriguez, Mary-Helene Noel, Daniel Vaulot, Wenche Eikrem (2017). Chloropicophyceae, a new class of picophytoplanktonic prasinophytes. Scientific Reports, (7), 1, pp. 14019, https://doi.org/10.1038/s41598-017-12412-5.

Dataset

Catherine Gerikas Ribeiro, Adriana Lopes dos Santos, Dominique Marie, Vivian Helena Pellizari, Frederico Pereira Brandini, Daniel Vaulot (2016). Pico and nanoplankton abundance and carbon stocks along the Brazilian Bight. PeerJ, (4), pp. e2587, https://doi.org/10.7717/peerj.2587.

Adriana Lopes dos Santos, Priscillia Gourvil, Francisco Rodriguez-Hernandez, Jose Luis Garrido, Daniel Vaulot (2016). Photosynthetic pigments of oceanic Chlorophyta belonging to prasinophytes clade VII. Journal of Phycology, (52), 1, pp. 148–155, https://doi.org/10.1111/jpy.12376.

Catherine Gerikas Ribeiro, Dominique Marie, Adriana Lopes dos Santos, Frederico Pereira Brandini, Daniel Vaulot (2016). Estimating microbial populations by flow cytometry: Comparison between instruments. Limnology and Oceanography: Methods, (14), 11, pp. 750–758, https://doi.org/10.1002/lom3.10135.

Mutsuo Ichinomiya, Adriana Lopes dos Santos, Priscillia Gourvil, Shinya Yoshikawa, Mitsunobu Kamiya, Kaori Ohki, Stephane Audic, Colomban de Vargas, Mary-Helene Noel, Daniel Vaulot (2016). Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms. The ISME Journal, (10), 10, pp. 2419–2434, https://doi.org/10.1038/ismej.2016.38.

Margot Tragin, Adriana Lopes dos Santos, R. Christen, D. Vaulot (2016). Diversity and ecology of green microalgae in marine systems: an overview based on 18S rRNA gene sequences. Perspectives in Phycology, (3), 3, pp. 141–154, https://doi.org/10.1127/pip/2016/0059.

Johan Decelle, Sarah Romac, Rowena F. Stern, El Mahdi Bendif, Adriana Zingone, Stephane Audic, Michael D. Guiry, Laure Guillou, Desire Tessier, Florence Le Gall (2015). PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy. Molecular Ecology Resources, (15), 6, pp. 1435–1445, https://doi.org/10.1111/1755-0998.12401.

Alvaro M Plominsky, Nathalie Delherbe, Juan A Ugalde, Eric E Allen, Marine Blanchet, Priscila Ikeda, Francisco Santibanez, Kurt Hanselmann, Osvaldo Ulloa, Rodrigo De la Iglesia (2014). Metagenome sequencing of the microbial community of a solar saltern crystallizer pond at Cáhuil Lagoon, Chile. Genome Announcements, (2), pp. e01172-14.

Caio T C C Rachid, Adriana Lopes dos Santos, Marisa C. Piccolo, Fabiano C. Balieiro, Heitor L C Coutinho, Raquel S. Peixoto, James M. Tiedje, Alexandre S. Rosado (2013). Effect of Sugarcane Burning or Green Harvest Methods on the Brazilian Cerrado Soil Bacterial Community Structure. PLoS ONE, (8).

Henrique Fragoso Dos Santos, Juliano Carvalho Cury, Flavia Lima do Carmo, Adriana Lopes dos Santos, James Tiedje, Jan Dirk van Elsas, Alexandre Soares Rosado, Raquel Silva Peixoto (2011). Mangrove bacterial diversity and the impact of oil contamination revealed by pyrosequencing: Bacterial proxies for oil pollution. PLoS ONE, (6).

Adriana Lopes dos Santos, Jose F. Siqueira, Isabela N. Rocas, Ederson C. Jesus, Alexandre S. Rosado, James M. Tiedje (2011). Comparing the bacterial diversity of acute and chronic dental root canal infections. PLoS ONE, (6).

Isabela N. Rocas, Flavio R F Alves, Adriana Lopes dos Santos, Alexandre S. Rosado, Jose F. Siqueira (2010). Apical root canal microbiota as determined by reverse-capture checkerboard analysis of cryogenically ground root samples from teeth with apical periodontitis. Journal of Endodontics, (36).

Adriana Lopes dos Santos, Raquel Peixoto, Alexandre Soares Rosado (2009). New approaches to understanding microbial diversity in wastewater, landfills and leachate treatment. Oecologia Australis, (13).

Luciana Jesus da Costa, Adriana Lopes dos Santos, Robert Mandic, Karen Shaw, Renato Santana de Aguiar, Amilcar Tanuri, Paul A. Luciw, B. Matija Peterlin (2009). Interactions between SIVNef, SIVGagPol and Alix correlate with viral replication and progression to AIDS in rhesus macaques. Virology, (394).

Flavio R F Alves, Jose F. Siqueira, Flavia L. Carmo, Adriana Lopes dos Santos, Raquel S. Peixoto, Isabela N. Rocas, Alexandre S. Rosado (2009). Bacterial Community Profiling of Cryogenically Ground Samples from the Apical and Coronal Root Segments of Teeth with Apical Periodontitis. Journal of Endodontics, (35).

Luciana J Costa, Nan Chen, Adriana Lopes dos Santos, Renato S Aguiar, Amilcar Tanuri, Ana Plemenitas, B Matija Peterlin (2006). Interactions between Nef and AIP1 proliferate multivesicular bodies and facilitate egress of HIV-1.. Retrovirology, (3).

Ana M B Martinez, Vanusa P D A Hora, Adriana Lopes dos Santos, Raul Mendoza-Sassi, Andrea Von Groll, Esmeralda A J M Scares, Nildo D'Avila, Jussara Silveira, Renata G. Leal, Hu-Furg, Amilcar Tanuri, Marcelo A. Soares (2006). Determinants of HIV-1 mother-to-child transmission in Southern Brazil. Anais da Academia Brasileira de Ciencias, (78).

C. Vargas, A. Lopes dos Santos, A. Hemerly (1999). Adaptation of the differential display RT-PCR technique to isolate sugarcane genes induced by plant association with endophytic nitrogen-fixing bacteria.. Anais da Academia Brasileira de Ciencias, (71).